PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005558m
Common NameCICLE_v10005558mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 290aa    MW: 31898.3 Da    PI: 8.2726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005558mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001225246323
                      ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                      Cp Cg +Fs+  +L  H  + H
  Ciclev10005558m 225 CPQCGARFSSVTTLIEHVEKiH 246
                      *****************99888 PP

2zf-C2H213.80.00018261283223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C++ F ++  L+ H  + H
  Ciclev10005558m 261 VCPKCSQGFCDPVALVEHVERdH 283
                      7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.18E-11652No hitNo description
PROSITE profilePS510397.7391059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.5E-101051IPR000058Zinc finger, AN1-type
PfamPF014281.8E-131351IPR000058Zinc finger, AN1-type
SMARTSM001540.00781352IPR000058Zinc finger, AN1-type
PROSITE patternPS0002806082IPR007087Zinc finger, C2H2
Gene3DG3DSA:4.10.1110.107.9E-1190145IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.86E-893143No hitNo description
PROSITE profilePS510397.9798146IPR000058Zinc finger, AN1-type
PfamPF014282.8E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.037101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.058223251IPR007087Zinc finger, C2H2
SMARTSM003550.12223246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280225246IPR007087Zinc finger, C2H2
SMARTSM003558.8260283IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGTPQFPDLG KHCSLPDCKQ IDFLPFTCDC CHKVFCLDHR SYNQHQCPKA ERHDVTVVIC  60
PLCAKGVRLR PDENPHITWE NHVNVDCDPS NYDKVTKKRK CPVRGCKEIL VFSNTIKCRD  120
CTVDHCLKHR FAPDHSCPGP KKLDTGFAFM SLLNRSRKEE PKPKQSPATS STKWTSSFLN  180
AASSFRASAE AGMSKLSNEI SQKLQIAKDG AGQSSSSGTG GTELCPQCGA RFSSVTTLIE  240
HVEKIHDRSG NQARPKVTVD VCPKCSQGFC DPVALVEHVE RDHGGTSRA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421415.10.0hypothetical protein CICLE_v10005558mg
SwissprotQ8VZ421e-126SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A067EEW80.0A0A067EEW8_CITSI; Uncharacterized protein
TrEMBLV4S7610.0V4S761_9R
STRINGGLYMA02G31550.21e-152(Glycine max)
STRINGGLYMA10G17510.21e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-125C2H2 family protein